This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

minionSummaryData

This is the development version of minionSummaryData; for the stable release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: Development (3.18)

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")
Creating example MinION summary dataset HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, SequencingData
Version 1.31.0
License MIT + file LICENSE
Depends R (>= 3.2.0)
Imports
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me IONiseR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minionSummaryData_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url https://bioconductor.org/packages/minionSummaryData/
Package Downloads Report Download Stats