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minionSummaryData

This is the development version of minionSummaryData; for the stable release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: Development (3.18)

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")
Creating example MinION summary dataset HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, SequencingData
Version 1.31.0
License MIT + file LICENSE
Depends R (>= 3.2.0)
Imports
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minionSummaryData_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url https://bioconductor.org/packages/minionSummaryData/
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