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msdata

This is the development version of msdata; for the stable release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: Development (3.18)

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("msdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MassSpectrometryData
Version 0.41.0
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports
Linking To
Suggests xcms, mzR, MSnbase
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me MsQuality
Suggests Me IPO, MetaboAnnotation, MobilityTransformR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, RforProteomics, Spectra, TargetDecoy, xcms
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msdata_0.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/msdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msdata
Package Short Url https://bioconductor.org/packages/msdata/
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