This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

muscData

This is the development version of muscData; for the stable release version, see muscData.

Multi-sample multi-group scRNA-seq data

Bioconductor version: Development (3.18)

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Citation (from within R, enter citation("muscData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("muscData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscData")
Multi-sample multi-group scRNA-seq data HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version 1.15.0
License MIT + file LICENSE
Depends R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports utils
Linking To
Suggests BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
System Requirements
Enhances
URL https://github.com/HelenaLC/muscData
Bug Reports https://github.com/HelenaLC/muscData/issues
See More
Depends On Me
Imports Me
Suggests Me glmGamPoi
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package muscData_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/muscData
Package Short Url https://bioconductor.org/packages/muscData/
Package Downloads Report Download Stats