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nanotubes

This is the development version of nanotubes; for the stable release version, see nanotubes.

Mouse nanotube CAGE data

Bioconductor version: Development (3.18)

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at gmail.com>

Citation (from within R, enter citation("nanotubes")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nanotubes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nanotubes")
nanotubes HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, SequencingData
Version 1.17.0
License GPL-3
Depends R (>= 3.6)
Imports
Linking To
Suggests knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
System Requirements
Enhances
URL https://github.com/MalteThodberg/nanotubes
Bug Reports https://github.com/MalteThodberg/nanotubes/issues
See More
Depends On Me CAGEWorkflow
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nanotubes_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/nanotubes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nanotubes
Package Short Url https://bioconductor.org/packages/nanotubes/
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