This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

pcxnData

This is the development version of pcxnData; for the stable release version, see pcxnData.

Correlation coefficients and p values between pre-defined pathway/gene sets

Bioconductor version: Development (3.18)

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

Author: Sokratis Kariotis, Yered Pita-Juarez, Wenbin Wei, Winston Hide

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pcxnData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")
pcxnData PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase
Version 2.23.0
License MIT + file LICENSE
Depends R (>= 3.4)
Imports
Linking To
Suggests pcxn
System Requirements
Enhances
URL
See More
Depends On Me pcxn
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pcxnData_2.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/pcxnData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pcxnData
Package Short Url https://bioconductor.org/packages/pcxnData/
Package Downloads Report Download Stats