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AHMassBank

MassBank Annotation Resources for AnnotationHub

Bioconductor version: Release (3.17)

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Author: Johannes Rainer [cre]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("AHMassBank")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHMassBank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHMassBank")
Provide EnsDb databases for AnnotationHub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationHubSoftware, MassSpectrometry, Software
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports AnnotationHubData(>= 1.5.24)
Linking To
Suggests BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown, methods, CompoundDb(>= 1.1.4)
System Requirements
Enhances
URL https://github.com/jorainer/AHMassBank
Bug Reports https://github.com/jorainer/AHMassBank/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHMassBank_1.0.0.tar.gz
Windows Binary AHMassBank_1.0.0.zip
macOS Binary (x86_64) AHMassBank_1.0.0.tgz
macOS Binary (arm64) AHMassBank_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AHMassBank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AHMassBank
Bioc Package Browser https://code.bioconductor.org/browse/AHMassBank/
Package Short Url https://bioconductor.org/packages/AHMassBank/
Package Downloads Report Download Stats