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ASSET

An R package for subset-based association analysis of heterogeneous traits and subtypes

Bioconductor version: Release (3.17)

An R package for subset-based analysis of heterogeneous traits and disease subtypes. The package allows the user to search through all possible subsets of z-scores to identify the subset of traits giving the best meta-analyzed z-score. Further, it returns a p-value adjusting for the multiple-testing involved in the search. It also allows for searching for the best combination of disease subtypes associated with each variant.

Author: Samsiddhi Bhattacharjee [aut, cre], Guanghao Qi [aut], Nilanjan Chatterjee [aut], William Wheeler [aut]

Maintainer: Samsiddhi Bhattacharjee <sb1 at nibmg.ac.in>

Citation (from within R, enter citation("ASSET")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASSET")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASSET")
ASSET Vignette PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GenomeWideAssociation, MultipleComparison, SNP, Software, StatisticalMethod
Version 2.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-2 + file LICENSE
Depends R (>= 3.5.0), stats, graphics
Imports MASS, msm, rmeta
Linking To
Suggests RUnit, BiocGenerics, knitr
System Requirements
Enhances
URL
See More
Depends On Me REBET
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASSET_2.18.0.tar.gz
Windows Binary ASSET_2.18.0.zip
macOS Binary (x86_64) ASSET_2.18.0.tgz
macOS Binary (arm64) ASSET_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASSET
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASSET
Bioc Package Browser https://code.bioconductor.org/browse/ASSET/
Package Short Url https://bioconductor.org/packages/ASSET/
Package Downloads Report Download Stats