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Anaquin

Statistical analysis of sequins

Bioconductor version: Release (3.17)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")
Anaquin - Vignette PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version 2.24.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License BSD_3_clause + file LICENSE
Depends R (>= 3.3), ggplot2 (>= 2.2.0)
Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2
Linking To
Suggests RUnit, rmarkdown
System Requirements
Enhances
URL www.sequin.xyz
Bug Reports https://github.com/student-t/RAnaquin/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Anaquin_2.24.0.tar.gz
Windows Binary Anaquin_2.24.0.zip
macOS Binary (x86_64) Anaquin_2.24.0.tgz
macOS Binary (arm64) Anaquin_2.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Anaquin
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Anaquin
Bioc Package Browser https://code.bioconductor.org/browse/Anaquin/
Package Short Url https://bioconductor.org/packages/Anaquin/
Package Downloads Report Download Stats