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BiocHail

basilisk and hail

Bioconductor version: Release (3.17)

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocHail")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHail")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHail")
01 BiocHail -- GWAS tutorial HTML R Script
02 Working with larger VCF: T2T by chromosome HTML R Script
03 Working with UK Biobank summary statistics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0), graphics, stats, utils
Imports reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics
Linking To
Suggests knitr, testthat, BiocStyle, ggplot2, DT
System Requirements
Enhances
URL https://github.com/vjcitn/BiocHail
Bug Reports https://github.com/vjcitn/BiocHail/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHail_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BiocHail
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHail
Bioc Package Browser https://code.bioconductor.org/browse/BiocHail/
Package Short Url https://bioconductor.org/packages/BiocHail/
Package Downloads Report Download Stats