BiocHail

basilisk and hail

Bioconductor version: Release (3.17)

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocHail")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHail")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHail")

01 BiocHail -- GWAS tutorial	HTML	R Script
02 Working with larger VCF: T2T by chromosome	HTML	R Script
03 Working with UK Biobank summary statistics	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0), graphics, stats, utils
Imports	reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics
Linking To
Suggests	knitr, testthat, BiocStyle, ggplot2, DT
System Requirements
Enhances
URL	https://github.com/vjcitn/BiocHail
Bug Reports	https://github.com/vjcitn/BiocHail/issues

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocHail_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BiocHail
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocHail
Bioc Package Browser	https://code.bioconductor.org/browse/BiocHail/
Package Short Url	https://bioconductor.org/packages/BiocHail/
Package Downloads Report	Download Stats