CNORfeeder
Integration of CellNOptR to add missing links
Bioconductor version: Release (3.17)
This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.
Author: Federica Eduati [aut], Enio Gjerga [ctb], Attila Gabor [cre]
Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>
citation("CNORfeeder")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNORfeeder")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORfeeder")| Main vignette:Playing with networks using CNORfeeder | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), CellNOptR(>= 1.4.0), graph |
| Imports | |
| Linking To | |
| Suggests | minet, Rgraphviz, RUnit, BiocGenerics, igraph |
| System Requirements | |
| Enhances | MEIGOR |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CNORfeeder_1.40.0.tar.gz |
| Windows Binary | CNORfeeder_1.40.0.zip (64-bit only) |
| macOS Binary (x86_64) | CNORfeeder_1.40.0.tgz |
| macOS Binary (arm64) | CNORfeeder_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CNORfeeder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNORfeeder |
| Bioc Package Browser | https://code.bioconductor.org/browse/CNORfeeder/ |
| Package Short Url | https://bioconductor.org/packages/CNORfeeder/ |
| Package Downloads Report | Download Stats |