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CSSP

ChIP-Seq Statistical Power

Bioconductor version: Release (3.17)

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Citation (from within R, enter citation("CSSP")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CSSP")
cssp.pdf PDF R Script
Reference Manual PDF

Details

biocViews Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version 1.37.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-2
Depends
Imports methods, splines, stats, utils
Linking To
Suggests testthat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CSSP_1.37.0.tar.gz
Windows Binary CSSP_1.37.0.zip (64-bit only)
macOS Binary (x86_64)
macOS Binary (arm64) CSSP_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CSSP
Bioc Package Browser https://code.bioconductor.org/browse/CSSP/
Package Short Url https://bioconductor.org/packages/CSSP/
Package Downloads Report Download Stats