DNAshapeR

High-throughput prediction of DNA shape features

Bioconductor version: Release (3.17)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAshapeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAshapeR")

DNAshapeR	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DNA3DStructure, Software, StructuralPrediction
Version	1.28.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	GPL-2
Depends	R (>= 3.4), GenomicRanges
Imports	Rcpp (>= 0.12.1), Biostrings, fields
Linking To	Rcpp
Suggests	AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DNAshapeR_1.28.0.tar.gz
Windows Binary	DNAshapeR_1.28.0.zip
macOS Binary (x86_64)	DNAshapeR_1.28.0.tgz
macOS Binary (arm64)	DNAshapeR_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DNAshapeR
Bioc Package Browser	https://code.bioconductor.org/browse/DNAshapeR/
Package Short Url	https://bioconductor.org/packages/DNAshapeR/
Package Downloads Report	Download Stats