This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

EBSeq

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: Release (3.17)

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Ning Leng, Christina Kendziorski

Maintainer: Ning Leng <lengning1 at gmail.com>

Citation (from within R, enter citation("EBSeq")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSeq")
EBSeq Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License Artistic-2.0
Depends blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me EBSeqHMM, Oscope
Imports Me DEsubs, scDD, scDDboost
Suggests Me compcodeR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSeq_1.40.0.tar.gz
Windows Binary EBSeq_1.40.0.zip
macOS Binary (x86_64) EBSeq_1.40.0.tgz
macOS Binary (arm64) EBSeq_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSeq
Bioc Package Browser https://code.bioconductor.org/browse/EBSeq/
Package Short Url https://bioconductor.org/packages/EBSeq/
Package Downloads Report Download Stats