GCSscore
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays
Bioconductor version: Release (3.17)
For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.
Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles
Maintainer: Guy M. Harris <harrisgm at vcu.edu>
Citation (from within R, enter
citation("GCSscore")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GCSscore")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GCSscore")| SScore primer | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4 years) |
| License | GPL (>=3) |
| Depends | R (>= 3.6) |
| Imports | BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table |
| Linking To | |
| Suggests | siggenes, GEOquery, R.utils |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GCSscore_1.14.0.tar.gz |
| Windows Binary | GCSscore_1.14.0.zip (64-bit only) |
| macOS Binary (x86_64) | GCSscore_1.14.0.tgz |
| macOS Binary (arm64) | GCSscore_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GCSscore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GCSscore |
| Bioc Package Browser | https://code.bioconductor.org/browse/GCSscore/ |
| Package Short Url | https://bioconductor.org/packages/GCSscore/ |
| Package Downloads Report | Download Stats |