This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

GISPA

GISPA: Method for Gene Integrated Set Profile Analysis

Bioconductor version: Release (3.17)

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("GISPA")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GISPA")
GISPA:Method for Gene Integrated Set Profile Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL-2
Depends R (>= 3.5)
Imports Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats
Linking To
Suggests knitr
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GISPA_1.24.0.tar.gz
Windows Binary GISPA_1.24.0.zip (64-bit only)
macOS Binary (x86_64) GISPA_1.24.0.tgz
macOS Binary (arm64) GISPA_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GISPA
Bioc Package Browser https://code.bioconductor.org/browse/GISPA/
Package Short Url https://bioconductor.org/packages/GISPA/
Package Downloads Report Download Stats