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GISPA

GISPA: Method for Gene Integrated Set Profile Analysis

Bioconductor version: Release (3.17)

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("GISPA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GISPA")
GISPA:Method for Gene Integrated Set Profile Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL-2
Depends R (>= 3.5)
Imports Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats
Linking To
Suggests knitr
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GISPA_1.24.0.tar.gz
Windows Binary GISPA_1.24.0.zip (64-bit only)
macOS Binary (x86_64) GISPA_1.24.0.tgz
macOS Binary (arm64) GISPA_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GISPA
Bioc Package Browser https://code.bioconductor.org/browse/GISPA/
Package Short Url https://bioconductor.org/packages/GISPA/
Package Downloads Report Download Stats