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GeneOverlap

Test and visualize gene overlaps

Bioconductor version: Release (3.17)

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")
Testing and visualizing gene overlaps with the "GeneOverlap" package PDF R Script
Reference Manual PDF

Details

biocViews MultipleComparison, Software, Visualization
Version 1.36.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL-3
Depends
Imports stats, RColorBrewer, gplots, methods
Linking To
Suggests RUnit, BiocGenerics, BiocStyle
System Requirements
Enhances
URL http://shenlab-sinai.github.io/shenlab-sinai/
See More
Depends On Me
Imports Me ATACCoGAPS
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneOverlap_1.36.0.tar.gz
Windows Binary GeneOverlap_1.36.0.zip (64-bit only)
macOS Binary (x86_64) GeneOverlap_1.36.0.tgz
macOS Binary (arm64) GeneOverlap_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneOverlap
Bioc Package Browser https://code.bioconductor.org/browse/GeneOverlap/
Package Short Url https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report Download Stats