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GeneticsPed

Pedigree and genetic relationship functions

Bioconductor version: Release (3.17)

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <DNADavenator at GMail.Com>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

Citation (from within R, enter citation("GeneticsPed")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneticsPed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneticsPed")
Calculation of genetic relatedness/relationship between individuals in the pedigree PDF R Script
Pedigree handling PDF R Script
Quantitative genetic (animal) model example in R PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Genetics, Software
Version 1.62.1
In Bioconductor since BioC 2.0 (R-2.5) (16.5 years)
License LGPL (>= 2.1) | file LICENSE
Depends R (>= 2.4.0), MASS
Imports gdata, genetics
Linking To
Suggests RUnit, gtools
System Requirements
Enhances
URL http://rgenetics.org
See More
Depends On Me
Imports Me LRQMM
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneticsPed_1.62.1.tar.gz
Windows Binary GeneticsPed_1.62.1.zip
macOS Binary (x86_64) GeneticsPed_1.62.1.tgz
macOS Binary (arm64) GeneticsPed_1.62.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneticsPed
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneticsPed
Bioc Package Browser https://code.bioconductor.org/browse/GeneticsPed/
Package Short Url https://bioconductor.org/packages/GeneticsPed/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive