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GenomicTuples

Representation and Manipulation of Genomic Tuples

Bioconductor version: Release (3.17)

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicTuples")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")
GenomicTuplesIntroduction HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.34.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License Artistic-2.0
Depends R (>= 4.0), GenomicRanges(>= 1.37.4), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25)
Imports methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.19.13), data.table, stats4, stats, utils
Linking To Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown, covr
System Requirements
Enhances
URL www.github.com/PeteHaitch/GenomicTuples
Bug Reports https://github.com/PeteHaitch/GenomicTuples/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicTuples_1.34.0.tar.gz
Windows Binary GenomicTuples_1.34.0.zip
macOS Binary (x86_64) GenomicTuples_1.34.0.tgz
macOS Binary (arm64) GenomicTuples_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicTuples
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicTuples
Bioc Package Browser https://code.bioconductor.org/browse/GenomicTuples/
Package Short Url https://bioconductor.org/packages/GenomicTuples/
Package Downloads Report Download Stats