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IMAS

Integrative analysis of Multi-omics data for Alternative Splicing

Bioconductor version: Release (3.17)

Integrative analysis of Multi-omics data for Alternative splicing.

Author: Seonggyun Han, Younghee Lee

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IMAS")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMAS")
IMAS : Integrative analysis of Multi-omics data for Alternative Splicing PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures, ggplot2, IVAS
Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, stats, ggfortify, grDevices, methods, Matrix, utils, graphics, gridExtra, grid, lattice, Rsamtools, survival, BiocParallel, GenomicAlignments, parallel
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IMAS_1.24.0.tar.gz
Windows Binary IMAS_1.24.0.zip
macOS Binary (x86_64) IMAS_1.24.0.tgz
macOS Binary (arm64) IMAS_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IMAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IMAS
Bioc Package Browser https://code.bioconductor.org/browse/IMAS/
Package Short Url https://bioconductor.org/packages/IMAS/
Package Downloads Report Download Stats