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Informeasure

R implementation of Information measures

Bioconductor version: Release (3.17)

This package compiles most of the information measures currently available: mutual information, conditional mutual information, interaction information, partial information decomposition and part mutual information. All of these estimators can be used to quantify nonlinear dependence between variables in (biological regulatory) network inference. The first estimator is used to infer bivariate networks while the last four estimators are dedicated to analysis of trivariate networks.

Author: Chu Pan [aut, cre]

Maintainer: Chu Pan <chu.pan at hnu.edu.cn>

Citation (from within R, enter citation("Informeasure")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Informeasure")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Informeasure")
Informeasure: a tool to quantify nonlinear dependence between variables in biological regulatory networks from an information theory perspective HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, Network, NetworkInference, Software
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0)
Imports entropy
Linking To
Suggests knitr, rmarkdown, testthat, SummarizedExperiment
System Requirements
Enhances
URL https://github.com/chupan1218/Informeasure
Bug Reports https://github.com/chupan1218/Informeasure/issues
See More
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Informeasure_1.10.0.tar.gz
Windows Binary Informeasure_1.10.0.zip
macOS Binary (x86_64) Informeasure_1.10.0.tgz
macOS Binary (arm64) Informeasure_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Informeasure
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Informeasure
Bioc Package Browser https://code.bioconductor.org/browse/Informeasure/
Package Short Url https://bioconductor.org/packages/Informeasure/
Package Downloads Report Download Stats