This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor version: Release (3.17)

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte

Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>

Citation (from within R, enter citation("MetaCyto")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaCyto")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaCyto")
Vignette Title HTML R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Preprocessing, Software, StatisticalMethod
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils
Linking To
Suggests knitr, dplyr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaCyto_1.22.0.tar.gz
Windows Binary MetaCyto_1.22.0.zip
macOS Binary (x86_64) MetaCyto_1.22.0.tgz
macOS Binary (arm64) MetaCyto_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaCyto
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaCyto
Bioc Package Browser https://code.bioconductor.org/browse/MetaCyto/
Package Short Url https://bioconductor.org/packages/MetaCyto/
Package Downloads Report Download Stats