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Metab

Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.

Bioconductor version: Release (3.17)

Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.

Author: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Maintainer: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Citation (from within R, enter citation("Metab")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Metab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Metab")
Applying Metab PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AMDIS, GCMS, ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.33.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL (>=2)
Depends xcms, R (>= 3.0.1), svDialogs
Imports pander
Linking To
Suggests RUnit, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Metab_1.33.0.tar.gz
Windows Binary Metab_1.33.0.zip
macOS Binary (x86_64)
macOS Binary (arm64) Metab_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Metab
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Metab
Bioc Package Browser https://code.bioconductor.org/browse/Metab/
Package Short Url https://bioconductor.org/packages/Metab/
Package Downloads Report Download Stats