Metab
Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.
Bioconductor version: Release (3.17)
Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.
Author: Raphael Aggio <ragg005 at aucklanduni.ac.nz>
Maintainer: Raphael Aggio <ragg005 at aucklanduni.ac.nz>
citation("Metab")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Metab")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Metab")| Applying Metab | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AMDIS, GCMS, ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Version | 1.33.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9 years) |
| License | GPL (>=2) |
| Depends | xcms, R (>= 3.0.1), svDialogs |
| Imports | pander |
| Linking To | |
| Suggests | RUnit, BiocGenerics |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Metab_1.33.0.tar.gz |
| Windows Binary | Metab_1.33.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | Metab_1.33.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Metab |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Metab |
| Bioc Package Browser | https://code.bioconductor.org/browse/Metab/ |
| Package Short Url | https://bioconductor.org/packages/Metab/ |
| Package Downloads Report | Download Stats |