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MobilityTransformR

Effective mobility scale transformation of CE-MS(/MS) data

Bioconductor version: Release (3.17)

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

Author: Liesa Salzer [cre, aut]

Maintainer: Liesa Salzer <liesa.salzer at helmholtz-muenchen.de>

Citation (from within R, enter citation("MobilityTransformR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MobilityTransformR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MobilityTransformR")
Description and usage of MobilityTransformR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software
Version 1.4.0
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License Artistic-2.0
Depends MSnbase, R (>= 4.2)
Imports xcms, MetaboCoreUtils, Spectra
Linking To
Suggests testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
System Requirements
Enhances
URL https://github.com/LiesaSalzer/MobilityTransformR
Bug Reports https://github.com/LiesaSalzer/MobilityTransformR/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MobilityTransformR_1.4.0.tar.gz
Windows Binary MobilityTransformR_1.4.0.zip (64-bit only)
macOS Binary (x86_64) MobilityTransformR_1.4.0.tgz
macOS Binary (arm64) MobilityTransformR_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MobilityTransformR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MobilityTransformR
Bioc Package Browser https://code.bioconductor.org/browse/MobilityTransformR/
Package Short Url https://bioconductor.org/packages/MobilityTransformR/
Package Downloads Report Download Stats