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MsBackendMsp

Mass Spectrometry Data Backend for NIST msp Files

Bioconductor version: Release (3.17)

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Author: Neumann Steffen [aut] , Johannes Rainer [aut, cre] , Michael Witting [ctb]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MsBackendMsp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMsp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMsp")
MsBackendMsp HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.4.0
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License Artistic-2.0
Depends R (>= 4.1.0), Spectra(>= 1.5.14)
Imports BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
Linking To
Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
System Requirements
Enhances
URL https://github.com/RforMassSpectrometry/MsBackendMsp
Bug Reports https://github.com/RforMassSpectrometry/MsBackendMsp/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMsp_1.4.0.tar.gz
Windows Binary MsBackendMsp_1.4.0.zip
macOS Binary (x86_64) MsBackendMsp_1.4.0.tgz
macOS Binary (arm64) MsBackendMsp_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendMsp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMsp
Bioc Package Browser https://code.bioconductor.org/browse/MsBackendMsp/
Package Short Url https://bioconductor.org/packages/MsBackendMsp/
Package Downloads Report Download Stats