MuData
Serialization for MultiAssayExperiment Objects
Bioconductor version: Release (3.17)
Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.
Author: Danila Bredikhin [aut, cre] , Ilia Kats [aut]
Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>
citation("MuData")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MuData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MuData")
Blood CITE-seq with MuData | HTML | R Script |
Cord Blood CITE-seq with MuData | HTML | R Script |
Getting started with MuDataMae | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.15 (R-4.2) (1.5 years) |
License | GPL-3 |
Depends | Matrix, S4Vectors, rhdf5 |
Imports | methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray |
Linking To | |
Suggests | HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater |
System Requirements | |
Enhances | |
URL | https://github.com/ilia-kats/MuData |
Bug Reports | https://github.com/ilia-kats/MuData/issues |
See More
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MuData_1.4.0.tar.gz |
Windows Binary | MuData_1.4.0.zip |
macOS Binary (x86_64) | MuData_1.4.0.tgz |
macOS Binary (arm64) | MuData_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MuData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MuData |
Bioc Package Browser | https://code.bioconductor.org/browse/MuData/ |
Package Short Url | https://bioconductor.org/packages/MuData/ |
Package Downloads Report | Download Stats |