This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

OpenStats

A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association

Bioconductor version: Release (3.17)

Package contains several methods for statistical analysis of genotype to phenotype association in high-throughput screening pipelines.

Author: Hamed Haseli Mashhadi

Maintainer: Hamed Haseli Mashhadi <hamedhm at ebi.ac.uk>

Citation (from within R, enter citation("OpenStats")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OpenStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OpenStats")
OpenStats HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, Bayesian, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL (>= 2)
Depends nlme
Imports MASS, jsonlite, Hmisc, methods, knitr, AICcmodavg, car, rlist, summarytools, graphics, stats, utils
Linking To
Suggests rmarkdown
System Requirements
Enhances
URL https://git.io/Jv5w0
Bug Reports https://git.io/Jv5wg
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OpenStats_1.12.0.tar.gz
Windows Binary OpenStats_1.12.0.zip (64-bit only)
macOS Binary (x86_64) OpenStats_1.12.0.tgz
macOS Binary (arm64) OpenStats_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OpenStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OpenStats
Bioc Package Browser https://code.bioconductor.org/browse/OpenStats/
Package Short Url https://bioconductor.org/packages/OpenStats/
Package Downloads Report Download Stats