This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: Release (3.17)

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <xin_wang at hms.harvard.edu>

Maintainer: Xin Wang <xin_wang at hms.harvard.edu>

Citation (from within R, enter citation("PANR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PANR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")
Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization
Version 1.46.0
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR
Linking To
Suggests snow
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PANR_1.46.0.tar.gz
Windows Binary PANR_1.46.0.zip
macOS Binary (x86_64) PANR_1.46.0.tgz
macOS Binary (arm64) PANR_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PANR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PANR
Bioc Package Browser https://code.bioconductor.org/browse/PANR/
Package Short Url https://bioconductor.org/packages/PANR/
Package Downloads Report Download Stats