PCAN

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: Release (3.17)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Citation (from within R, enter citation("PCAN")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCAN")

Assessing gene relevance for a set of phenotypes	HTML	R Script
Reference Manual	PDF

Details

biocViews	Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version	1.28.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	CC BY-NC-ND 4.0
Depends	R (>= 3.3), BiocParallel
Imports	grDevices, stats
Linking To
Suggests	BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
System Requirements
Enhances
URL

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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PCAN_1.28.0.tar.gz
Windows Binary	PCAN_1.28.0.zip
macOS Binary (x86_64)	PCAN_1.28.0.tgz
macOS Binary (arm64)	PCAN_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PCAN
Bioc Package Browser	https://code.bioconductor.org/browse/PCAN/
Package Short Url	https://bioconductor.org/packages/PCAN/
Package Downloads Report	Download Stats