This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

PICS

Probabilistic inference of ChIP-seq

Bioconductor version: Release (3.17)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")
The PICS users guide HTML R Script
Reference Manual PDF

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization
Version 2.44.0
In Bioconductor since BioC 2.6 (R-2.11) (13.5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
Linking To
Suggests rtracklayer, parallel, knitr
System Requirements
Enhances
URL https://github.com/SRenan/PICS
Bug Reports https://github.com/SRenan/PICS/issues
See More
Depends On Me
Imports Me PING
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.44.0.tar.gz
Windows Binary PICS_2.44.0.zip
macOS Binary (x86_64)
macOS Binary (arm64) PICS_2.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Bioc Package Browser https://code.bioconductor.org/browse/PICS/
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats