PROPS

PRObabilistic Pathway Score (PROPS)

Bioconductor version: Release (3.17)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Citation (from within R, enter citation("PROPS")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PROPS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPS")

PRObabilistic Pathway Scores (PROPS)	HTML	R Script
Reference Manual	PDF

Details

biocViews	Bayesian, Classification, GeneExpression, Software
Version	1.22.0
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	GPL-2
Depends
Imports	bnlearn, reshape2, sva, stats, utils, Biobase
Linking To
Suggests	knitr, rmarkdown
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPS_1.22.0.tar.gz
Windows Binary	PROPS_1.22.0.zip (64-bit only)
macOS Binary (x86_64)	PROPS_1.22.0.tgz
macOS Binary (arm64)	PROPS_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PROPS
Bioc Package Browser	https://code.bioconductor.org/browse/PROPS/
Package Short Url	https://bioconductor.org/packages/PROPS/
Package Downloads Report	Download Stats