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PrecisionTrialDrawer

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

A Tool to Analyze and Design NGS Based Custom Gene Panels

Bioconductor version: Release (3.17)

A suite of methods to design umbrella and basket trials for precision oncology.

Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Citation (from within R, enter citation("PrecisionTrialDrawer")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PrecisionTrialDrawer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6)
Imports graphics, grDevices, stats, utils, methods, cBioPortalData, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
Linking To
Suggests BiocStyle, knitr, rmarkdown, dplyr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Package Short Url https://bioconductor.org/packages/PrecisionTrialDrawer/
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