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RNAmodR.ML

Detecting patterns of post-transcriptional modifications using machine learning

Bioconductor version: Release (3.17)

RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.ML")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.ML")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.ML")
RNAmodR.ML HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Sequencing, Software, Visualization, WorkflowStep
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License Artistic-2.0
Depends R (>= 3.6), RNAmodR
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, stats, ranger
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data, RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer, keras
System Requirements
Enhances
URL https://github.com/FelixErnst/RNAmodR.ML
Bug Reports https://github.com/FelixErnst/RNAmodR.ML/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.ML_1.14.0.tar.gz
Windows Binary RNAmodR.ML_1.14.0.zip
macOS Binary (x86_64) RNAmodR.ML_1.14.0.tgz
macOS Binary (arm64) RNAmodR.ML_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.ML
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.ML
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.ML/
Package Short Url https://bioconductor.org/packages/RNAmodR.ML/
Package Downloads Report Download Stats