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RNAmodR.RiboMethSeq

Detection of 2'-O methylations by RiboMethSeq

Bioconductor version: Release (3.17)

RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.RiboMethSeq")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.RiboMethSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.RiboMethSeq")
RNAmodR.RiboMethSeq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Sequencing, Software, Visualization, WorkflowStep
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License Artistic-2.0
Depends R (>= 4.0), RNAmodR(>= 1.5.3)
Imports methods, S4Vectors, BiocGenerics, IRanges, GenomicRanges, Gviz
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat, rtracklayer, RNAmodR.Data
System Requirements
Enhances
URL https://github.com/FelixErnst/RNAmodR.RiboMethSeq
Bug Reports https://github.com/FelixErnst/RNAmodR.RiboMethSeq/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.RiboMethSeq_1.14.0.tar.gz
Windows Binary RNAmodR.RiboMethSeq_1.14.0.zip
macOS Binary (x86_64) RNAmodR.RiboMethSeq_1.14.0.tgz
macOS Binary (arm64) RNAmodR.RiboMethSeq_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.RiboMethSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.RiboMethSeq
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.RiboMethSeq/
Package Short Url https://bioconductor.org/packages/RNAmodR.RiboMethSeq/
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