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RUVnormalize

RUV for normalization of expression array data

Bioconductor version: Release (3.17)

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at univ-lyon1.fr>

Citation (from within R, enter citation("RUVnormalize")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RUVnormalize")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVnormalize")
RUVnormalize PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Normalization, Software, StatisticalMethod
Version 1.34.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL-3
Depends R (>= 2.10.0)
Imports RUVnormalizeData, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RUVnormalize_1.34.0.tar.gz
Windows Binary RUVnormalize_1.34.0.zip
macOS Binary (x86_64) RUVnormalize_1.34.0.tgz
macOS Binary (arm64) RUVnormalize_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RUVnormalize
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RUVnormalize
Bioc Package Browser https://code.bioconductor.org/browse/RUVnormalize/
Package Short Url https://bioconductor.org/packages/RUVnormalize/
Package Downloads Report Download Stats