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RandomWalkRestartMH

Random walk with restart on multiplex and heterogeneous Networks

Bioconductor version: Release (3.17)

This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks" .

Author: Alberto Valdeolivas [cre, aut, ctb]

Maintainer: Alberto Valdeolivas <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("RandomWalkRestartMH")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RandomWalkRestartMH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RandomWalkRestartMH")
Random Walk with Restart on Multiplex and Heterogeneous Network HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology
Version 1.20.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports igraph, Matrix, dnet, methods
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/alberto-valdeolivas/RandomWalkRestartMH
Bug Reports https://github.com/alberto-valdeolivas/RandomWalkRestartMH/issues
See More
Depends On Me
Imports Me netOmics
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RandomWalkRestartMH_1.20.0.tar.gz
Windows Binary RandomWalkRestartMH_1.20.0.zip
macOS Binary (x86_64) RandomWalkRestartMH_1.20.0.tgz
macOS Binary (arm64) RandomWalkRestartMH_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RandomWalkRestartMH
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RandomWalkRestartMH
Bioc Package Browser https://code.bioconductor.org/browse/RandomWalkRestartMH/
Package Short Url https://bioconductor.org/packages/RandomWalkRestartMH/
Package Downloads Report Download Stats