This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Rbwa

R wrapper for BWA-backtrack and BWA-MEM aligners

Bioconductor version: Release (3.17)

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("Rbwa")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rbwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbwa")
An introduction to Rbwa HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Alignment, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports
Linking To
Suggests testthat, BiocStyle, knitr, rmarkdown
System Requirements GNU make
Enhances
URL https://github.com/Jfortin1/Rbwa
Bug Reports https://github.com/Jfortin1/Rbwa/issues
See More
Depends On Me
Imports Me crisprBwa
Suggests Me crisprDesign
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbwa_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64) Rbwa_1.4.0.tgz
macOS Binary (arm64) Rbwa_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rbwa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbwa
Bioc Package Browser https://code.bioconductor.org/browse/Rbwa/
Package Short Url https://bioconductor.org/packages/Rbwa/
Package Downloads Report Download Stats