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RcwlPipelines

Bioinformatics pipelines based on Rcwl

Bioconductor version: Release (3.17)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")
RcwlPipelines HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports rappdirs, methods, utils, git2r, httr, S4Vectors
Linking To
Suggests testthat, knitr, rmarkdown, BiocStyle
System Requirements nodejs
Enhances
URL
See More
Depends On Me
Imports Me ReUseData
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64) RcwlPipelines_1.16.0.tgz
macOS Binary (arm64) RcwlPipelines_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines
Bioc Package Browser https://code.bioconductor.org/browse/RcwlPipelines/
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report Download Stats