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ReactomeContentService4R

Interface for the Reactome Content Service

Bioconductor version: Release (3.17)

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Citation (from within R, enter citation("ReactomeContentService4R")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomeContentService4R")
ReactomeContentService4R HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Pathways, Reactome, Software
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License Apache License (>= 2.0) | file LICENSE
Depends
Imports httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel
Linking To
Suggests pdftools, testthat, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/reactome/ReactomeContentService4R
Bug Reports https://github.com/reactome/ReactomeContentService4R/issues
See More
Depends On Me
Imports Me ReactomeGraph4R
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ReactomeContentService4R_1.8.0.tar.gz
Windows Binary ReactomeContentService4R_1.8.0.zip
macOS Binary (x86_64) ReactomeContentService4R_1.8.0.tgz
macOS Binary (arm64) ReactomeContentService4R_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReactomeContentService4R
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReactomeContentService4R
Bioc Package Browser https://code.bioconductor.org/browse/ReactomeContentService4R/
Package Short Url https://bioconductor.org/packages/ReactomeContentService4R/
Package Downloads Report Download Stats