Rtpca

Thermal proximity co-aggregation with R

Bioconductor version: Release (3.17)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("Rtpca")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")

Introduction to Rtpca	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DataImport, Proteomics, Software
Version	1.10.0
In Bioconductor since	BioC 3.12 (R-4.0) (3 years)
License	GPL-3
Depends	R (>= 4.0.0), stats, dplyr, tidyr
Imports	Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
Linking To
Suggests	knitr, BiocStyle, TPP, testthat, rmarkdown
System Requirements
Enhances
URL
Bug Reports	https://support.bioconductor.org/

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rtpca_1.10.0.tar.gz
Windows Binary	Rtpca_1.10.0.zip
macOS Binary (x86_64)	Rtpca_1.10.0.tgz
macOS Binary (arm64)	Rtpca_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rtpca
Bioc Package Browser	https://code.bioconductor.org/browse/Rtpca/
Package Short Url	https://bioconductor.org/packages/Rtpca/
Package Downloads Report	Download Stats