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SEtools

SEtools: tools for working with SummarizedExperiment

Bioconductor version: Release (3.17)

This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("SEtools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")
SEtools HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, Software
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL
Depends R (>= 4.0), SummarizedExperiment, sechm
Imports BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva
Linking To
Suggests BiocStyle, knitr, rmarkdown, ggplot2
System Requirements
Enhances
URL
Bug Reports https://github.com/plger/SEtools
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEtools_1.14.0.tar.gz
Windows Binary SEtools_1.14.0.zip
macOS Binary (x86_64) SEtools_1.14.0.tgz
macOS Binary (arm64) SEtools_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEtools
Bioc Package Browser https://code.bioconductor.org/browse/SEtools/
Package Short Url https://bioconductor.org/packages/SEtools/
Package Downloads Report Download Stats