SMAD

Statistical Modelling of AP-MS Data (SMAD)

Bioconductor version: Release (3.17)

Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre]

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Citation (from within R, enter citation("SMAD")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")

SMAD Quick Start	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.16.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.6.0), RcppAlgos
Imports	magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)
Linking To	Rcpp
Suggests	knitr, rmarkdown, testthat, BiocStyle
System Requirements
Enhances
URL

Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SMAD_1.16.0.tar.gz
Windows Binary	SMAD_1.16.0.zip
macOS Binary (x86_64)	SMAD_1.16.0.tgz
macOS Binary (arm64)	SMAD_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SMAD
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SMAD
Bioc Package Browser	https://code.bioconductor.org/browse/SMAD/
Package Short Url	https://bioconductor.org/packages/SMAD/
Package Downloads Report	Download Stats