TRESS

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: Release (3.17)

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>

Citation (from within R, enter citation("TRESS")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRESS")

The TRESS User's Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software
Version	1.6.0
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	GPL-3 + file LICENSE
Depends	R (>= 4.1.0), parallel, S4Vectors
Imports	utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
Linking To
Suggests	knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL

Depends On Me
Imports Me	magpie
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TRESS_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)	TRESS_1.6.0.tgz
macOS Binary (arm64)	TRESS_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TRESS
Bioc Package Browser	https://code.bioconductor.org/browse/TRESS/
Package Short Url	https://bioconductor.org/packages/TRESS/
Package Downloads Report	Download Stats