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TnT

Interactive Visualization for Genomic Features

Bioconductor version: Release (3.17)

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")
Introduction to TnT HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License AGPL-3
Depends R (>= 3.4), GenomicRanges
Imports methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
Linking To
Suggests GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/Marlin-Na/TnT
Bug Reports https://github.com/Marlin-Na/TnT/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TnT_1.22.0.tar.gz
Windows Binary TnT_1.22.0.zip (64-bit only)
macOS Binary (x86_64) TnT_1.22.0.tgz
macOS Binary (arm64) TnT_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TnT
Bioc Package Browser https://code.bioconductor.org/browse/TnT/
Package Short Url https://bioconductor.org/packages/TnT/
Package Downloads Report Download Stats