TransView
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Bioconductor version: Release (3.17)
This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.
Author: Julius Muller
Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>
Citation (from within R, enter
citation("TransView")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TransView")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TransView")| An introduction to TransView | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11 years) |
| License | GPL-3 |
| Depends | methods, GenomicRanges |
| Imports | BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots |
| Linking To | Rhtslib(>= 1.99.1) |
| Suggests | RUnit, pasillaBamSubset, BiocManager |
| System Requirements | GNU make |
| Enhances | |
| URL | http://bioconductor.org/packages/release/bioc/html/TransView.html |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TransView_1.44.0.tar.gz |
| Windows Binary | TransView_1.44.0.zip |
| macOS Binary (x86_64) | TransView_1.44.0.tgz |
| macOS Binary (arm64) | TransView_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TransView |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransView |
| Bioc Package Browser | https://code.bioconductor.org/browse/TransView/ |
| Package Short Url | https://bioconductor.org/packages/TransView/ |
| Package Downloads Report | Download Stats |