This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Trendy

Breakpoint analysis of time-course expression data

Bioconductor version: Release (3.17)

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("Trendy")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Trendy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Trendy")
Trendy Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, RNASeq, Regression, Software, TimeCourse
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL-3
Depends R (>= 3.4)
Imports stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles
Linking To
Suggests BiocStyle, knitr, rmarkdown, devtools
System Requirements
Enhances
URL https://github.com/rhondabacher/Trendy
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Trendy_1.22.0.tar.gz
Windows Binary Trendy_1.22.0.zip
macOS Binary (x86_64) Trendy_1.22.0.tgz
macOS Binary (arm64) Trendy_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Trendy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Trendy
Bioc Package Browser https://code.bioconductor.org/browse/Trendy/
Package Short Url https://bioconductor.org/packages/Trendy/
Package Downloads Report Download Stats