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alabaster.se

Load and Save SummarizedExperiments from File

Bioconductor version: Release (3.17)

Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.se")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.se")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.se")
Saving and loading SummarizedExperiments HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, DataRepresentation, Software
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends SummarizedExperiment, alabaster.base
Imports methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges
Linking To
Suggests rmarkdown, knitr, testthat, BiocStyle, jsonlite
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me alabaster, alabaster.mae, alabaster.sce, alabaster.vcf
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.se_1.0.0.tar.gz
Windows Binary alabaster.se_1.0.0.zip
macOS Binary (x86_64) alabaster.se_1.0.0.tgz
macOS Binary (arm64) alabaster.se_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/alabaster.se
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.se
Bioc Package Browser https://code.bioconductor.org/browse/alabaster.se/
Package Short Url https://bioconductor.org/packages/alabaster.se/
Package Downloads Report Download Stats