biobtreeR

Using biobtree tool from R

Bioconductor version: Release (3.17)

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

The biobtreeR users guide	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Details

biocViews	Annotation, Software
Version	1.12.0
In Bioconductor since	BioC 3.11 (R-4.0) (3.5 years)
License	MIT + file LICENSE
Depends
Imports	httr, httpuv, stringi, jsonlite, methods, utils
Linking To
Suggests	BiocStyle, knitr, testthat, rmarkdown, markdown
System Requirements
Enhances
URL	https://github.com/tamerh/biobtreeR
Bug Reports	https://github.com/tamerh/biobtreeR/issues

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biobtreeR_1.12.0.tar.gz
Windows Binary	biobtreeR_1.12.0.zip
macOS Binary (x86_64)	biobtreeR_1.12.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/biobtreeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biobtreeR
Bioc Package Browser	https://code.bioconductor.org/browse/biobtreeR/
Package Short Url	https://bioconductor.org/packages/biobtreeR/
Package Downloads Report	Download Stats