This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

brainflowprobes

Plots and annotation for choosing BrainFlow target probe sequence

Bioconductor version: Release (3.17)

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Citation (from within R, enter citation("brainflowprobes")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("brainflowprobes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainflowprobes")
brainflowprobes users guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)
Linking To
Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
System Requirements
Enhances
URL https://github.com/LieberInstitute/brainflowprobes
Bug Reports https://support.bioconductor.org/t/brainflowprobes
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package brainflowprobes_1.14.0.tar.gz
Windows Binary brainflowprobes_1.14.0.zip
macOS Binary (x86_64) brainflowprobes_1.14.0.tgz
macOS Binary (arm64) brainflowprobes_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/brainflowprobes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brainflowprobes
Bioc Package Browser https://code.bioconductor.org/browse/brainflowprobes/
Package Short Url https://bioconductor.org/packages/brainflowprobes/
Package Downloads Report Download Stats