ccmap

Combination Connectivity Mapping

Bioconductor version: Release (3.17)

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccmap")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")

ccmap vignette	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version	1.26.0
In Bioconductor since	BioC 3.4 (R-3.3) (7 years)
License	MIT + file LICENSE
Depends
Imports	AnnotationDbi(>= 1.36.2), BiocManager (>= 1.30.4), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1)
Linking To
Suggests	crossmeta, knitr, rmarkdown, testthat, lydata
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ccmap_1.26.0.tar.gz
Windows Binary	ccmap_1.26.0.zip (64-bit only)
macOS Binary (x86_64)	ccmap_1.26.0.tgz
macOS Binary (arm64)	ccmap_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ccmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ccmap
Bioc Package Browser	https://code.bioconductor.org/browse/ccmap/
Package Short Url	https://bioconductor.org/packages/ccmap/
Package Downloads Report	Download Stats