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crisprseekplus

crisprseekplus

Bioconductor version: Release (3.17)

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("crisprseekplus")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprseekplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprseekplus")
DEBrowser Vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GeneRegulation, SequenceMatching, Software
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash
Linking To
Suggests testthat, rmarkdown, knitr, R.rsp
System Requirements
Enhances
URL https://github.com/UMMS-Biocore/crisprseekplus
Bug Reports https://github.com/UMMS-Biocore/crisprseekplus/issues/new
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package crisprseekplus_1.26.0.tar.gz
Windows Binary crisprseekplus_1.26.0.zip
macOS Binary (x86_64) crisprseekplus_1.26.0.tgz
macOS Binary (arm64) crisprseekplus_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/crisprseekplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/crisprseekplus
Bioc Package Browser https://code.bioconductor.org/browse/crisprseekplus/
Package Short Url https://bioconductor.org/packages/crisprseekplus/
Package Downloads Report Download Stats